Coverage
Nastassia Gobet
22 September 2019
# store all paths to plots
paths <- array(data="", dim=c(8,20))
rownames(paths) <- c("B61nsd", "B62nsd", "DB1nsd", "DB2nsd", "LB61nsd", "LB62nsd", "LDB1nsd", "LDB2nsd")
colnames(paths) <- c(1:19,"X")
##paths
for(chr in colnames(paths)){
for(s in rownames(paths)){
paths[s, chr] <- paste("plots_logE_shiftEnd/", s, "_", chr, ".png", sep="")
}
}plot by chromosome
The order of samples is B61nsd, B62nsd, DB1nsd, DB2nsd, LB61nsd, LB62nsd, LDB1nsd, LDB2nsd. Biological replicates are on the sample row.
plot by sample
Session information
This document is built with R version 3.5.1. More info:
## R version 3.5.1 (2018-07-02)
## Platform: x86_64-w64-mingw32/x64 (64-bit)
## Running under: Windows 10 x64 (build 18362)
##
## Matrix products: default
##
## locale:
## [1] LC_COLLATE=French_Switzerland.1252 LC_CTYPE=French_Switzerland.1252
## [3] LC_MONETARY=French_Switzerland.1252 LC_NUMERIC=C
## [5] LC_TIME=French_Switzerland.1252
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] knitr_1.24
##
## loaded via a namespace (and not attached):
## [1] compiler_3.5.1 magrittr_1.5 tools_3.5.1 htmltools_0.3.6
## [5] yaml_2.2.0 Rcpp_1.0.2 stringi_1.4.3 rmarkdown_1.15
## [9] stringr_1.4.0 xfun_0.9 digest_0.6.20 evaluate_0.14